Variant report

Variant	rs9561826
Chromosome Location	chr13:95926133-95926134
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95873940..95876786-chr13:95925021..95926772,2	K562	blood:
2	chr13:95924370..95928427-chr13:95951382..95954630,5	K562	blood:

Variant related genes	Relation type
ENSG00000125257	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17300935	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4148422	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4148431	0.90[EUR][1000 genomes]
rs59257629	0.92[EUR][1000 genomes]
rs9561824	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533659	chr13:95757713-96042149	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1043019	chr13:95924585-96152616	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95897000-95927400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr13:95908000-95926600	Weak transcription	Gastric	stomach
3	chr13:95910200-95927400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr13:95913600-95932800	Weak transcription	Primary B cells from peripheral blood	blood
5	chr13:95917000-95931400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr13:95919000-95930000	Weak transcription	Esophagus	oesophagus
7	chr13:95919800-95928000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr13:95920200-95928800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr13:95920200-95952800	Weak transcription	Aorta	Aorta
10	chr13:95920400-95927400	Weak transcription	Hela-S3	cervix
11	chr13:95920600-95928200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr13:95921400-95926200	Weak transcription	Right Atrium	heart
13	chr13:95921600-95927600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr13:95922200-95926200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr13:95922400-95926200	Weak transcription	Small Intestine	intestine
16	chr13:95922400-95927600	Weak transcription	Brain Anterior Caudate	brain
17	chr13:95922400-95927800	Weak transcription	NHEK	skin
18	chr13:95922800-95926400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr13:95922800-95928200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr13:95923000-95926400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr13:95923800-95926200	Weak transcription	Duodenum Mucosa	Duodenum
22	chr13:95923800-95941200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr13:95924000-95926600	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr13:95924000-95927400	Weak transcription	NHDF-Ad	bronchial
25	chr13:95924200-95927400	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr13:95924200-95927600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr13:95924200-95927600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr13:95924200-95928000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr13:95924200-95930800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr13:95924200-95932800	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr13:95924400-95926200	Weak transcription	Fetal Intestine Large	intestine
32	chr13:95924400-95926400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr13:95924400-95926400	Weak transcription	HepG2	liver
34	chr13:95924400-95926600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr13:95924400-95926800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr13:95924400-95927400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr13:95924400-95927800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr13:95924400-95927800	Weak transcription	Brain Substantia Nigra	brain
39	chr13:95924400-95927800	Weak transcription	NH-A	brain
40	chr13:95924600-95926200	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr13:95924600-95926600	Weak transcription	Rectal Smooth Muscle	rectum
42	chr13:95924600-95927400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr13:95924600-95927400	Weak transcription	HSMM	muscle
44	chr13:95924600-95927600	Weak transcription	Fetal Muscle Leg	muscle
45	chr13:95924600-95928000	Weak transcription	Osteobl	bone
46	chr13:95924600-95928400	Weak transcription	Fetal Muscle Trunk	muscle
47	chr13:95924600-95952600	Weak transcription	Primary hematopoietic stem cells	blood
48	chr13:95924800-95926400	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr13:95924800-95926400	Weak transcription	Fetal Kidney	kidney
50	chr13:95924800-95927400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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