Variant report

Variant	rs9561868
Chromosome Location	chr13:96039270-96039271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11620587	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12100016	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2993558	0.80[ASN][1000 genomes]
rs2993559	0.80[ASN][1000 genomes]
rs4773893	0.81[ASN][1000 genomes]
rs4773894	0.81[ASN][1000 genomes]
rs4773895	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4773896	0.81[ASN][1000 genomes]
rs4773897	0.81[ASN][1000 genomes]
rs6492784	0.81[ASN][1000 genomes]
rs7323782	0.81[ASN][1000 genomes]
rs7334421	0.81[ASN][1000 genomes]
rs7986687	0.81[ASN][1000 genomes]
rs9524953	0.81[ASN][1000 genomes]
rs9524954	0.81[ASN][1000 genomes]
rs9524958	0.81[ASN][1000 genomes]
rs9561865	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533659	chr13:95757713-96042149	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1043019	chr13:95924585-96152616	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1037673	chr13:95930191-96146554	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv541882	chr13:95930191-96146554	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv525525	chr13:96000749-96047070	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv2830243	chr13:96001349-96042020	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv524855	chr13:96035883-96047924	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96033000-96040000	Weak transcription	Right Atrium	heart
2	chr13:96037400-96041600	Enhancers	Colon Smooth Muscle	Colon
3	chr13:96037600-96040600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:96037800-96041200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr13:96038000-96041600	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr13:96038600-96039800	Enhancers	GM12878-XiMat	blood
7	chr13:96038800-96040400	Enhancers	Adipose Nuclei	Adipose
8	chr13:96038800-96040600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr13:96038800-96041000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr13:96039000-96039400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr13:96039000-96040200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr13:96039000-96040800	Enhancers	Fetal Stomach	stomach
13	chr13:96039200-96041200	Enhancers	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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