Variant report

Variant	rs9562770
Chromosome Location	chr13:48420169-48420170
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11841343	0.83[EUR][1000 genomes]
rs12871654	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1467625	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17085	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs1819244	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1966196	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1966197	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7336029	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7336197	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs879458	0.89[CEU][hapmap]
rs9526401	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9526402	0.80[AMR][1000 genomes]
rs9567933	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9595803	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3510679	chr13:48236624-48498185	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3510680	chr13:48236624-48498185	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv561589	chr13:48251736-48420218	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2383197	chr13:48419735-48420255	Enhancers	n/a	n/a	inside rSNPs	diseases
5	esv3521402	chr13:48419828-48420187	Enhancers	n/a	n/a	inside rSNPs	diseases
6	esv3521406	chr13:48419842-48420184	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48419000-48420400	Enhancers	HMEC	breast
2	chr13:48419000-48421400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:48420000-48421800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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