Variant report

Variant	rs9563073
Chromosome Location	chr13:52362480-52362481
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:52025709..52029684-chr13:52361886..52365561,3	MCF-7	breast:
2	chr13:52024804..52026542-chr13:52362122..52364177,2	K562	blood:
3	chr13:52356403..52357979-chr13:52360988..52363353,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236778	Chromatin interaction
ENSG00000224892	Chromatin interaction
ENSG00000102786	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs9568640	1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs9568646	1.00[TSI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832612	chr13:52176983-52362525	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv530718	chr13:52291802-52832752	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv933424	chr13:52293482-52507732	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv455884	chr13:52302630-52405251	Enhancers Flanking Active TSS Strong transcription Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv561644	chr13:52302630-52405251	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv455887	chr13:52318522-52405251	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	nsv561645	chr13:52318522-52405251	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	nsv1044310	chr13:52321564-52643924	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
9	nsv1050117	chr13:52325116-52643924	Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
10	esv1840020	chr13:52345838-52388765	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52339600-52375000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr13:52339800-52371400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr13:52339800-52375200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr13:52344600-52371800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr13:52345400-52363400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr13:52346400-52376000	Weak transcription	Thymus	Thymus
7	chr13:52348200-52362600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr13:52348200-52375600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr13:52348200-52375600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr13:52350600-52367200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr13:52353000-52366400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr13:52353000-52368200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr13:52353400-52366400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr13:52353600-52367200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr13:52354800-52363800	Enhancers	Pancreas	Pancrea
16	chr13:52355000-52370600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr13:52356000-52367200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr13:52356000-52371000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr13:52356000-52371400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr13:52356200-52367600	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr13:52356400-52367600	Weak transcription	Primary B cells from cord blood	blood
22	chr13:52356600-52367200	Weak transcription	Esophagus	oesophagus
23	chr13:52356600-52367600	Weak transcription	Primary B cells from peripheral blood	blood
24	chr13:52357200-52371200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr13:52358000-52372000	Weak transcription	HepG2	liver
26	chr13:52358600-52368200	Weak transcription	Fetal Intestine Small	intestine
27	chr13:52358600-52375600	Weak transcription	Colonic Mucosa	Colon
28	chr13:52359000-52375600	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr13:52360000-52362600	Enhancers	Left Ventricle	heart
30	chr13:52360400-52363000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr13:52360400-52373600	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr13:52360600-52376000	Weak transcription	Gastric	stomach
33	chr13:52360800-52370600	Weak transcription	Aorta	Aorta
34	chr13:52360800-52371000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr13:52360800-52375600	Weak transcription	Fetal Intestine Large	intestine
36	chr13:52361000-52374800	Weak transcription	Stomach Mucosa	stomach
37	chr13:52361000-52375600	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr13:52361200-52367800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr13:52361400-52363400	Weak transcription	Primary T cells from cord blood	blood
40	chr13:52361400-52367200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr13:52361400-52367400	Weak transcription	HSMMtube	muscle
42	chr13:52361400-52373200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr13:52361600-52362800	Weak transcription	NHDF-Ad	bronchial
44	chr13:52361600-52363000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr13:52361600-52363200	Weak transcription	Adipose Nuclei	Adipose
46	chr13:52361600-52363400	Weak transcription	Brain Hippocampus Middle	brain
47	chr13:52361600-52366400	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr13:52361600-52366400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr13:52361600-52367200	Weak transcription	Brain Substantia Nigra	brain
50	chr13:52361600-52367200	Weak transcription	HSMM	muscle

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