Variant report

Variant	rs9563202
Chromosome Location	chr13:54773365-54773366
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1335986	0.94[ASN][1000 genomes]
rs1360776	0.94[ASN][1000 genomes]
rs1413882	0.94[ASN][1000 genomes]
rs1414545	0.94[ASN][1000 genomes]
rs1467838	0.94[ASN][1000 genomes]
rs2105024	0.92[ASN][1000 genomes]
rs2152083	0.83[ASN][1000 genomes]
rs2409028	0.94[ASN][1000 genomes]
rs6420308	0.94[ASN][1000 genomes]
rs7326175	0.83[ASN][1000 genomes]
rs7326336	0.95[ASN][1000 genomes]
rs9316707	0.95[ASN][1000 genomes]
rs9536648	0.81[ASN][1000 genomes]
rs9563203	0.94[ASN][1000 genomes]
rs9568993	0.95[ASN][1000 genomes]
rs9568994	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568995	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3375545	chr13:54517432-54908108	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv561701	chr13:54711276-54826104	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54769000-54774000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:54769000-54774400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr13:54770400-54774800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr13:54770600-54773400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr13:54770600-54781000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr13:54772800-54773600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr13:54772800-54775200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr13:54773000-54773400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr13:54773000-54773400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr13:54773000-54774400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr13:54773200-54773400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr13:54773200-54773600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr13:54773200-54775600	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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