Variant report

Variant	rs9563880
Chromosome Location	chr13:61711316-61711317
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs7333785	0.91[ASN][1000 genomes]
rs7337453	0.91[ASN][1000 genomes]
rs7987454	0.89[ASN][1000 genomes]
rs9563879	0.89[ASN][1000 genomes]
rs9563883	0.97[ASN][1000 genomes]
rs9563884	0.97[ASN][1000 genomes]
rs9563888	0.94[ASN][1000 genomes]
rs9563899	1.00[CEU][hapmap]
rs9570464	0.89[ASN][1000 genomes]
rs9570466	0.89[ASN][1000 genomes]
rs9570468	0.89[ASN][1000 genomes]
rs9570469	0.89[ASN][1000 genomes]
rs9570471	0.89[ASN][1000 genomes]
rs9570475	0.95[ASN][1000 genomes]
rs9570477	1.00[ASN][1000 genomes]
rs9570478	0.97[ASN][1000 genomes]
rs9570479	0.92[ASN][1000 genomes]
rs9570488	0.91[ASN][1000 genomes]
rs9570489	0.91[ASN][1000 genomes]
rs9570490	0.91[ASN][1000 genomes]
rs9570491	0.91[ASN][1000 genomes]
rs9570492	0.91[ASN][1000 genomes]
rs9570494	0.86[ASN][1000 genomes]
rs9570497	0.86[ASN][1000 genomes]
rs9570502	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832627	chr13:61642811-61829217	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
2	esv3444432	chr13:61665252-61781081	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
3	nsv900243	chr13:61711163-61799269	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61710600-61716000	Weak transcription	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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