Variant report

Variant	rs9563894
Chromosome Location	chr13:61752694-61752695
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs7333785	0.81[AMR][1000 genomes]
rs7337453	0.81[AMR][1000 genomes]
rs9563898	0.81[AMR][1000 genomes]
rs9563899	0.81[AMR][1000 genomes]
rs9570488	0.81[AMR][1000 genomes]
rs9570489	0.81[AMR][1000 genomes]
rs9570490	0.81[AMR][1000 genomes]
rs9570491	0.81[AMR][1000 genomes]
rs9570492	0.81[AMR][1000 genomes]
rs9570494	0.81[AMR][1000 genomes]
rs9570497	0.81[AMR][1000 genomes]
rs9570499	0.81[AMR][1000 genomes]
rs9570500	0.81[AMR][1000 genomes]
rs9570501	0.81[AMR][1000 genomes]
rs9570502	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832627	chr13:61642811-61829217	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
2	esv3444432	chr13:61665252-61781081	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
3	nsv900243	chr13:61711163-61799269	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61750200-61753600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr13:61750400-61753400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr13:61750400-61754200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr13:61752000-61753400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr13:61752000-61753800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr13:61752600-61753600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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