Variant report

Variant	rs956587
Chromosome Location	chr10:52336743-52336744
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:52330729..52340229-chr10:52381715..52386294,12	K562	blood:
2	chr10:52334364..52340801-chr10:52380166..52385556,10	K562	blood:
3	chr10:52310656..52316983-chr10:52334408..52339466,9	K562	blood:
4	chr10:52318973..52324648-chr10:52334040..52339164,5	K562	blood:
5	chr10:52335773..52337467-chr10:52361237..52363170,2	K562	blood:
6	chr10:52335913..52338170-chr10:52340995..52342949,2	MCF-7	breast:
7	chr10:52335825..52337405-chr10:52342195..52344591,2	K562	blood:
8	chr10:52324915..52329170-chr10:52335171..52340296,4	K562	blood:
9	chr10:52336198..52337725-chr10:52386422..52388764,2	K562	blood:
10	chr10:52333380..52335821-chr10:52336012..52337715,2	K562	blood:
11	chr10:52311229..52315083-chr10:52335257..52337670,4	K562	blood:
12	chr10:52336186..52338969-chr10:52390237..52392466,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000198964	Chromatin interaction
ENSG00000226200	Chromatin interaction
ENSG00000231588	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11005832	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054775	chr10:51595893-52392361	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1051087	chr10:51886486-52447295	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv916214	chr10:51886486-52458983	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv918212	chr10:51886486-52465482	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv817412	chr10:51911034-52432990	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv469522	chr10:52276564-52447589	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv482564	chr10:52276564-52447589	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	nsv8660	chr10:52328259-52346278	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52308000-52337200	Weak transcription	Primary T cells from cord blood	blood
2	chr10:52313600-52337400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr10:52315200-52337400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr10:52322000-52337200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:52322000-52348600	Weak transcription	Fetal Stomach	stomach
6	chr10:52324000-52337400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:52324400-52336800	Weak transcription	Primary B cells from cord blood	blood
8	chr10:52324400-52336800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr10:52329800-52341600	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr10:52332000-52336800	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr10:52332400-52337400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr10:52332400-52337600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:52332400-52337800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr10:52332400-52340200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:52332600-52337600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr10:52332600-52343800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr10:52332800-52336800	Weak transcription	Fetal Intestine Small	intestine
18	chr10:52332800-52337400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:52332800-52337400	Weak transcription	Aorta	Aorta
20	chr10:52333200-52337400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr10:52333200-52340600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr10:52333400-52341000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr10:52333800-52337600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr10:52333800-52337800	Weak transcription	HepG2	liver
25	chr10:52334400-52337600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr10:52334400-52337800	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr10:52334600-52336800	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr10:52334600-52337000	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr10:52334600-52337400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr10:52334600-52340400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr10:52334600-52341200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr10:52335000-52338200	Enhancers	Left Ventricle	heart
33	chr10:52335000-52338200	Enhancers	Pancreas	Pancrea
34	chr10:52335000-52341800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr10:52335000-52343800	Enhancers	Liver	Liver
36	chr10:52335200-52337000	Enhancers	Right Ventricle	heart
37	chr10:52335200-52338200	Enhancers	Brain Angular Gyrus	brain
38	chr10:52335400-52336800	Enhancers	Brain Anterior Caudate	brain
39	chr10:52335400-52337600	Enhancers	Fetal Heart	heart
40	chr10:52335400-52337800	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr10:52335400-52338600	Enhancers	Brain Cingulate Gyrus	brain
42	chr10:52335600-52336800	Enhancers	Colon Smooth Muscle	Colon
43	chr10:52335600-52337400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr10:52335600-52337400	Enhancers	Brain Inferior Temporal Lobe	brain
45	chr10:52335600-52337600	Enhancers	Fetal Lung	lung
46	chr10:52335600-52338200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr10:52335600-52338200	Enhancers	Muscle Satellite Cultured Cells	--
48	chr10:52335600-52338200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr10:52335600-52338200	Enhancers	Adipose Nuclei	Adipose
50	chr10:52335600-52338200	Enhancers	Fetal Muscle Leg	muscle

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