Variant report

Variant	rs9565920
Chromosome Location	chr13:84716095-84716096
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2774076	0.94[ASN][1000 genomes]
rs4129856	0.93[ASN][1000 genomes]
rs4405440	0.92[ASN][1000 genomes]
rs4638456	0.94[ASN][1000 genomes]
rs4885908	0.92[ASN][1000 genomes]
rs61961312	0.85[ASN][1000 genomes]
rs7337947	0.94[ASN][1000 genomes]
rs9319024	0.93[ASN][1000 genomes]
rs9565917	0.93[ASN][1000 genomes]
rs9565918	0.93[ASN][1000 genomes]
rs9565919	0.89[ASN][1000 genomes]
rs9575515	0.80[ASN][1000 genomes]
rs9575523	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046982	chr13:84631965-84800765	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1038880	chr13:84632431-84861839	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv949402	chr13:84675752-85606846	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1035493	chr13:84683545-84779862	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1044494	chr13:84705200-84897141	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:84711600-84716600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr13:84713800-84716200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr13:84715400-84720200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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