Variant report

Variant	rs9565966
Chromosome Location	chr13:85271209-85271210
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12100200	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13313254	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13378761	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28456198	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9319065	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9565955	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9565956	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9565967	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9575612	0.82[EUR][1000 genomes]
rs9575613	0.82[EUR][1000 genomes]
rs9575621	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9575623	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9575636	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9602523	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9602524	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9602525	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9630346	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949402	chr13:84675752-85606846	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv900691	chr13:85206473-85294881	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv1851778	chr13:85206473-85299207	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv900692	chr13:85218788-85294881	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv900693	chr13:85226116-85291768	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv900694	chr13:85226116-85344527	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:85268200-85274600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:85271200-85271600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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