Variant report

Variant	rs956619
Chromosome Location	chr8:108495264-108495265
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17296456	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1825819	chr8:108495057-108506185	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv1832361	chr8:108495057-108506185	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1844679	chr8:108495057-108506185	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108482800-108495600	Weak transcription	Fetal Lung	lung
2	chr8:108489400-108496600	Weak transcription	Ovary	ovary
3	chr8:108489800-108497000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr8:108492400-108496800	Weak transcription	Psoas Muscle	Psoas
5	chr8:108492600-108497600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:108492800-108498200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr8:108493000-108498400	Weak transcription	NHDF-Ad	bronchial
8	chr8:108493200-108497600	Weak transcription	Osteobl	bone
9	chr8:108493600-108496800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr8:108494600-108495800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr8:108494800-108495400	Weak transcription	Left Ventricle	heart
12	chr8:108494800-108497200	Weak transcription	NHLF	lung
13	chr8:108494800-108497400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr8:108494800-108497400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr8:108494800-108497800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr8:108494800-108502000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr8:108495000-108495600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr8:108495000-108497400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr8:108495000-108497600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr8:108495200-108495400	Enhancers	Colon Smooth Muscle	Colon
21	chr8:108495200-108497000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links