Variant report

Variant	rs9566397
Chromosome Location	chr13:39675294-39675295
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1109625	0.87[CEU][hapmap]
rs11147745	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs12428445	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs12429324	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs12430450	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs1326405	0.87[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs17058947	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs17058990	1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs17059014	0.93[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs2274384	0.87[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs2274385	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs2296648	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs35804724	0.82[ASN][1000 genomes]
rs3751377	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs3751378	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs3751379	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs3812879	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4142398	0.92[ASN][1000 genomes]
rs55809136	0.82[ASN][1000 genomes]
rs7317852	0.87[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs7318688	0.82[ASN][1000 genomes]
rs7327748	0.87[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs747752	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs7987207	0.87[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap]
rs7994530	0.90[ASN][1000 genomes]
rs7997052	0.87[CEU][hapmap];0.93[CHB][hapmap];0.84[JPT][hapmap]
rs8000929	0.94[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs9566391	0.82[ASN][1000 genomes]
rs9566393	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9566396	0.92[ASN][1000 genomes]
rs9576666	0.87[CEU][hapmap]
rs9576669	0.87[CEU][hapmap];0.87[CHB][hapmap];0.84[JPT][hapmap]
rs9576678	0.87[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap]
rs9576679	0.87[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap]
rs9576685	0.86[AMR][1000 genomes]
rs9576697	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs9576698	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs9576699	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs9576701	0.82[ASN][1000 genomes]
rs9576703	0.81[ASN][1000 genomes]
rs9576705	0.87[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs9576707	0.82[ASN][1000 genomes]
rs9576710	0.87[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs9576711	0.87[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs9576717	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1035255	chr13:39618302-39715336	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39669000-39677000	Weak transcription	Brain Hippocampus Middle	brain
2	chr13:39673600-39677200	Weak transcription	Fetal Muscle Leg	muscle
3	chr13:39674200-39675600	Enhancers	Fetal Brain Female	brain
4	chr13:39674600-39677800	Enhancers	Fetal Brain Male	brain
5	chr13:39675200-39675400	Enhancers	Brain Substantia Nigra	brain
6	chr13:39675200-39676000	Enhancers	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links