Variant report
| Variant | rs9567888 |
|---|---|
| Chromosome Location | chr13:48147425-48147426 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1111727 | 0.90[EUR][1000 genomes] |
| rs1111728 | 0.90[EUR][1000 genomes] |
| rs1326462 | 0.84[EUR][1000 genomes] |
| rs1326463 | 0.91[EUR][1000 genomes] |
| rs1326464 | 0.91[EUR][1000 genomes] |
| rs1590591 | 0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1590592 | 0.90[EUR][1000 genomes] |
| rs1853992 | 0.90[EUR][1000 genomes] |
| rs1853993 | 0.90[EUR][1000 genomes] |
| rs2897407 | 0.91[EUR][1000 genomes] |
| rs4142842 | 0.96[EUR][1000 genomes] |
| rs4142843 | 0.91[EUR][1000 genomes] |
| rs4142844 | 0.96[EUR][1000 genomes] |
| rs4270069 | 0.82[EUR][1000 genomes] |
| rs4942651 | 0.91[EUR][1000 genomes] |
| rs4942653 | 0.91[EUR][1000 genomes] |
| rs6561393 | 0.90[EUR][1000 genomes] |
| rs9316319 | 0.90[EUR][1000 genomes] |
| rs9567896 | 0.91[EUR][1000 genomes] |
| rs9567901 | 0.90[EUR][1000 genomes] |
| rs9591087 | 0.96[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3450125 | chr13:47919050-48236684 | Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv455879 | chr13:47919611-48190106 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv561588 | chr13:47943829-48190106 | Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv900065 | chr13:48106733-48215874 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:48146600-48147600 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
