Variant report

Variant	rs9568165
Chromosome Location	chr13:49751464-49751465
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1407828	1.00[MKK][hapmap];1.00[YRI][hapmap]
rs2025315	1.00[MKK][hapmap];1.00[YRI][hapmap]
rs3012131	1.00[MKK][hapmap];1.00[YRI][hapmap]
rs3012137	1.00[MKK][hapmap];1.00[YRI][hapmap]
rs4942806	1.00[AFR][1000 genomes]
rs59706083	1.00[AFR][1000 genomes]
rs7992530	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv1793883	chr13:49543723-49789164	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv1796840	chr13:49671215-49760666	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49687600-49789000	Weak transcription	Stomach Mucosa	stomach
2	chr13:49722800-49752800	Weak transcription	Psoas Muscle	Psoas
3	chr13:49724400-49765000	Weak transcription	A549	lung
4	chr13:49736400-49760000	Weak transcription	NHLF	lung
5	chr13:49737800-49788800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr13:49738000-49777000	Weak transcription	Small Intestine	intestine
7	chr13:49738400-49754600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr13:49738400-49758000	Weak transcription	Fetal Heart	heart
9	chr13:49738400-49762000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr13:49738400-49785200	Strong transcription	Liver	Liver
11	chr13:49738600-49757200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr13:49738600-49761400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr13:49738600-49785000	Strong transcription	Dnd41	blood
14	chr13:49738800-49761800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr13:49739000-49752200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr13:49739000-49761800	Weak transcription	Brain Hippocampus Middle	brain
17	chr13:49739000-49768200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr13:49739000-49774200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr13:49739200-49752400	Weak transcription	Colon Smooth Muscle	Colon
20	chr13:49739200-49755600	Strong transcription	Primary T cells from cord blood	blood
21	chr13:49739600-49786400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr13:49739800-49755400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr13:49740000-49752200	Weak transcription	Fetal Brain Male	brain
24	chr13:49740000-49752200	Weak transcription	Right Ventricle	heart
25	chr13:49740000-49757200	Weak transcription	HMEC	breast
26	chr13:49740000-49761600	Weak transcription	Rectal Smooth Muscle	rectum
27	chr13:49740200-49751800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr13:49740200-49786000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr13:49740400-49752400	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr13:49740400-49756000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr13:49740400-49762400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr13:49740400-49784800	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr13:49740600-49752400	Weak transcription	Gastric	stomach
34	chr13:49740600-49752600	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr13:49740600-49752600	Weak transcription	Lung	lung
36	chr13:49740600-49756600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr13:49740600-49768400	Strong transcription	Fetal Thymus	thymus
38	chr13:49740600-49769000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr13:49740600-49772800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr13:49740600-49786600	Strong transcription	Placenta	Placenta
41	chr13:49740800-49752200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr13:49740800-49752400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr13:49740800-49762400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr13:49741200-49755000	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr13:49741600-49752400	Weak transcription	Brain Anterior Caudate	brain
46	chr13:49741600-49755000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
47	chr13:49741600-49783400	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr13:49741800-49755000	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr13:49742600-49754800	Strong transcription	Primary B cells from cord blood	blood
50	chr13:49742600-49783400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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