Variant report

Variant	rs956824
Chromosome Location	chr8:9944274-9944275
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:9911742..9913347-chr8:9941855..9944442,2	K562	blood:

Variant related genes	Relation type
ENSG00000260093	Chromatin interaction
ENSG00000175806	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10098342	1.00[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10216752	1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11775290	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11995711	0.81[ASN][1000 genomes]
rs1521194	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17151071	1.00[CEU][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs17738724	0.90[CEU][hapmap]
rs17739113	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs17739179	0.89[JPT][hapmap]
rs2628140	0.90[CEU][hapmap];0.89[JPT][hapmap]
rs2661755	0.84[EUR][1000 genomes]
rs28710334	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs472514	0.90[CEU][hapmap]
rs534667	0.82[EUR][1000 genomes]
rs728878	0.88[CEU][hapmap];0.89[JPT][hapmap]
rs7812741	0.85[CEU][hapmap];0.86[JPT][hapmap]
rs814405	0.88[CEU][hapmap];0.89[JPT][hapmap]
rs9329213	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916493	chr8:9806580-10029482	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv610263	chr8:9941021-10090149	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9913200-9944800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:9914800-9947200	Weak transcription	Left Ventricle	heart
3	chr8:9929600-9947200	Weak transcription	Aorta	Aorta
4	chr8:9938800-9944800	Weak transcription	Primary B cells from cord blood	blood
5	chr8:9940000-9949400	Weak transcription	Spleen	Spleen
6	chr8:9940200-9948600	Weak transcription	Primary T cells from cord blood	blood
7	chr8:9941400-9944400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr8:9941600-9947200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr8:9941800-9944600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:9941800-9944800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:9942000-9947200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr8:9942200-9944600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:9942200-9944800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr8:9943800-9944800	Enhancers	NHEK	skin
15	chr8:9943800-9945800	Enhancers	HMEC	breast
16	chr8:9944200-9944800	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr8:9944200-9945200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr8:9944200-9945200	Enhancers	NH-A	brain
19	chr8:9944200-9945800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr8:9944200-9947800	Enhancers	Primary neutrophils fromperipheralblood	blood

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