Variant report

Variant	rs9568442
Chromosome Location	chr13:51097400-51097401
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs2286657	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs279075	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4603449	0.88[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs61962260	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6561582	0.93[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7983949	0.90[CHB][hapmap]
rs7991128	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7994628	0.90[CEU][hapmap];0.95[JPT][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9316500	0.94[ASN][1000 genomes]
rs9562984	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9562985	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9562986	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9568434	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568440	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9568441	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9634835	0.89[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.91[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs963740	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	nsv1045237	chr13:50976560-51102386	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51087800-51102000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr13:51088200-51100800	Weak transcription	Primary B cells from cord blood	blood
3	chr13:51090200-51099200	Enhancers	Liver	Liver
4	chr13:51092400-51098400	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr13:51093200-51097800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr13:51093400-51100000	Weak transcription	Lung	lung
7	chr13:51093400-51100600	Weak transcription	Brain Germinal Matrix	brain
8	chr13:51093400-51101400	Weak transcription	Left Ventricle	heart
9	chr13:51093400-51101600	Weak transcription	Right Atrium	heart
10	chr13:51093400-51102000	Weak transcription	HSMMtube	muscle
11	chr13:51093600-51101600	Weak transcription	HSMM	muscle
12	chr13:51093800-51100800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr13:51093800-51101600	Weak transcription	Brain Angular Gyrus	brain
14	chr13:51094000-51097800	Enhancers	Fetal Muscle Leg	muscle
15	chr13:51094400-51097800	Enhancers	Fetal Kidney	kidney
16	chr13:51094600-51097800	Enhancers	Colon Smooth Muscle	Colon
17	chr13:51094800-51101000	Weak transcription	Pancreas	Pancrea
18	chr13:51095000-51101600	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr13:51095200-51098000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr13:51095200-51098000	Enhancers	Adipose Nuclei	Adipose
21	chr13:51095200-51098000	Enhancers	Fetal Heart	heart
22	chr13:51095400-51097800	Enhancers	Fetal Stomach	stomach
23	chr13:51095400-51098200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr13:51095600-51097600	Enhancers	Fetal Intestine Small	intestine
25	chr13:51095600-51098600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr13:51095600-51100600	Weak transcription	Brain Hippocampus Middle	brain
27	chr13:51095800-51097600	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr13:51095800-51098400	Enhancers	Osteobl	bone
29	chr13:51095800-51102000	Weak transcription	Right Ventricle	heart
30	chr13:51096000-51098600	Enhancers	Fetal Lung	lung
31	chr13:51096000-51100800	Weak transcription	Brain Substantia Nigra	brain
32	chr13:51096000-51100800	Weak transcription	NHLF	lung
33	chr13:51096000-51101800	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr13:51096000-51103200	Weak transcription	Ovary	ovary
35	chr13:51096200-51101400	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr13:51096200-51102200	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr13:51096400-51097400	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr13:51096400-51099600	Weak transcription	Dnd41	blood
39	chr13:51096400-51099800	Weak transcription	Fetal Thymus	thymus
40	chr13:51096400-51100200	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr13:51096400-51100600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr13:51096400-51101000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr13:51096400-51101000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr13:51096600-51098000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr13:51096600-51099800	Weak transcription	Thymus	Thymus
46	chr13:51096600-51100600	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr13:51096600-51100800	Weak transcription	Brain Anterior Caudate	brain
48	chr13:51096600-51100800	Weak transcription	Placenta	Placenta
49	chr13:51096600-51100800	Weak transcription	Stomach Smooth Muscle	stomach
50	chr13:51096600-51101000	Weak transcription	Rectal Smooth Muscle	rectum

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