Variant report

Variant	rs9568522
Chromosome Location	chr13:51689495-51689496
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:12)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:12 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr13:51689416-51689515	K562	blood:	n/a	n/a
2	CTCF	chr13:51689429-51689592	MCF-7	breast:	n/a	n/a
3	CTCF	chr13:51689452-51689547	A549	lung:	n/a	n/a
4	CTCF	chr13:51689438-51689544	Hela-S3	cervix:	n/a	n/a
5	CTCF	chr13:51689408-51689567	MCF-7	breast:	n/a	n/a
6	CTCF	chr13:51689424-51689555	MCF-7	breast:	n/a	n/a
7	CTCF	chr13:51689400-51689550	MCF-7	breast:	n/a	n/a
8	CTCF	chr13:51689448-51689556	MCF-7	breast:	n/a	n/a
9	CTCF	chr13:51689423-51689584	MCF-7	breast:	n/a	n/a
10	CTCF	chr13:51689466-51689540	H1-hESC	embryonic stem cell:	n/a	n/a
11	CTCF	chr13:51689400-51689550	GM12870	blood:	n/a	n/a
12	CTCF	chr13:51689400-51689550	HepG2	liver:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51689105..51690749-chr13:51693667..51695208,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12875596	0.82[EUR][1000 genomes]
rs12876050	0.82[EUR][1000 genomes]
rs3929767	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9563022	0.85[CEU][hapmap]
rs9563023	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9568520	0.85[CEU][hapmap]
rs9568525	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9568527	0.96[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs959952	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv518074	chr13:51685789-51690384	Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51672800-51692400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:51676200-51695200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr13:51685200-51691000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr13:51686000-51693000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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