Variant report

Variant	rs9568557
Chromosome Location	chr13:51810512-51810513
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12584566	0.94[EUR][1000 genomes]
rs2148527	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2408301	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9563039	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9568554	0.84[AMR][1000 genomes]
rs9568558	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51799800-51818200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr13:51805200-51825600	Weak transcription	Aorta	Aorta
3	chr13:51805400-51810600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr13:51806200-51814000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr13:51808000-51810600	Genic enhancers	HUES6 Cell Line	embryonic stem cell
6	chr13:51808000-51812600	Enhancers	Brain Cingulate Gyrus	brain
7	chr13:51808000-51821200	Enhancers	Brain Substantia Nigra	brain
8	chr13:51808200-51810600	Genic enhancers	HUES64 Cell Line	embryonic stem cell
9	chr13:51808400-51814400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr13:51808400-51821400	Enhancers	Fetal Heart	heart
11	chr13:51808600-51820000	Weak transcription	Fetal Brain Female	brain
12	chr13:51808800-51814000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr13:51808800-51816400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr13:51809000-51818200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr13:51809600-51810600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr13:51809600-51810800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr13:51809800-51810600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr13:51809800-51810600	Enhancers	H9 Cell Line	embryonic stem cell
19	chr13:51809800-51810600	Enhancers	Adipose Nuclei	Adipose
20	chr13:51809800-51810600	Enhancers	Brain Anterior Caudate	brain
21	chr13:51809800-51810800	Genic enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr13:51809800-51810800	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr13:51809800-51813200	Enhancers	Fetal Lung	lung
24	chr13:51810000-51811400	Enhancers	Brain Angular Gyrus	brain
25	chr13:51810000-51818200	Weak transcription	Brain Germinal Matrix	brain
26	chr13:51810200-51811600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr13:51810200-51814000	Weak transcription	Colon Smooth Muscle	Colon
28	chr13:51810200-51814800	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr13:51810200-51818200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr13:51810200-51820200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr13:51810400-51810600	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr13:51810400-51810600	Enhancers	Brain Inferior Temporal Lobe	brain
33	chr13:51810400-51811000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr13:51810400-51811000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr13:51810400-51811600	Weak transcription	Left Ventricle	heart
36	chr13:51810400-51811600	Weak transcription	Right Atrium	heart
37	chr13:51810400-51811600	Weak transcription	Right Ventricle	heart
38	chr13:51810400-51812000	Weak transcription	Lung	lung
39	chr13:51810400-51812000	Weak transcription	Spleen	Spleen
40	chr13:51810400-51813400	Enhancers	Brain Hippocampus Middle	brain
41	chr13:51810400-51813400	Weak transcription	HUVEC	blood vessel
42	chr13:51810400-51814400	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr13:51810400-51814400	Weak transcription	Fetal Stomach	stomach
44	chr13:51810400-51814600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr13:51810400-51816400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr13:51810400-51818000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr13:51810400-51820000	Weak transcription	Fetal Brain Male	brain

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