Variant report

Variant	rs9568884
Chromosome Location	chr13:54265629-54265630
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1889996	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2785813	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2785814	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2785815	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2785820	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2785821	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2806727	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36044722	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7320587	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9568877	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9591525	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9596840	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9596841	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044137	chr13:54124103-54521120	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv541777	chr13:54124103-54521120	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv900091	chr13:54182173-54272104	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54264800-54265800	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr13:54264800-54266000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr13:54264800-54266000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:54264800-54266000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr13:54264800-54266200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr13:54264800-54266200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr13:54265000-54266000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr13:54265000-54266200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr13:54265600-54266000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr13:54265600-54266000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr13:54265600-54266200	Enhancers	H9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links