Variant report

Variant	rs957240
Chromosome Location	chr8:10063508-10063509
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17749155	0.80[TSI][hapmap]
rs7832976	0.80[CHB][hapmap];0.92[JPT][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7836718	0.84[MEX][hapmap]
rs7844115	0.87[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv610263	chr8:9941021-10090149	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv831230	chr8:9953343-10139350	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv831231	chr8:10001214-10189094	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1026335	chr8:10037279-10139782	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10050000-10068000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:10053600-10065000	Weak transcription	Brain Germinal Matrix	brain
3	chr8:10053800-10087000	Weak transcription	Spleen	Spleen
4	chr8:10054000-10064200	Weak transcription	Brain Angular Gyrus	brain
5	chr8:10055200-10063800	Weak transcription	Fetal Brain Female	brain
6	chr8:10055400-10074600	Weak transcription	Left Ventricle	heart
7	chr8:10055400-10078400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr8:10055600-10086200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:10056600-10064800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr8:10058400-10077600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:10058400-10086200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr8:10059000-10063600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr8:10060200-10103000	Weak transcription	Gastric	stomach
14	chr8:10060800-10064000	Weak transcription	Aorta	Aorta
15	chr8:10061200-10074400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr8:10061400-10071200	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr8:10062400-10068000	Enhancers	Fetal Brain Male	brain
18	chr8:10062600-10078200	Weak transcription	Pancreas	Pancrea
19	chr8:10062600-10078400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr8:10062800-10067400	Weak transcription	Primary T cells from cord blood	blood
21	chr8:10062800-10078200	Weak transcription	Brain Hippocampus Middle	brain
22	chr8:10063000-10064000	Weak transcription	Lung	lung
23	chr8:10063000-10066400	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr8:10063200-10065000	Weak transcription	Brain Cingulate Gyrus	brain
25	chr8:10063200-10067000	Weak transcription	Liver	Liver
26	chr8:10063400-10064000	Enhancers	HepG2	liver
27	chr8:10063400-10069200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr8:10063400-10075200	Weak transcription	Primary hematopoietic stem cells	blood

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