Variant report

Variant	rs9573545
Chromosome Location	chr13:76031966-76031967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:76016614..76019558-chr13:76031564..76033175,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1570539	0.88[JPT][hapmap]
rs1570541	0.89[GIH][hapmap];0.88[JPT][hapmap]
rs4394965	0.84[EUR][1000 genomes]
rs4883999	0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs6562896	0.86[JPT][hapmap]
rs7318786	0.86[JPT][hapmap]
rs7335576	0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs9318349	0.88[JPT][hapmap]
rs9565164	1.00[ASN][1000 genomes]
rs9565165	0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs9565168	0.94[GIH][hapmap];0.88[JPT][hapmap];0.94[MKK][hapmap];0.80[ASN][1000 genomes]
rs9573544	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9573546	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9573547	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9573553	1.00[ASN][1000 genomes]
rs9573554	0.85[ASN][1000 genomes]
rs9573555	0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs9573560	0.84[ASN][1000 genomes]
rs9573562	0.86[ASN][1000 genomes]
rs9573563	0.84[ASN][1000 genomes]
rs9634999	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761803	chr13:75943309-76161774	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv455987	chr13:75972846-76090084	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv562346	chr13:75972846-76090084	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76007400-76032000	Weak transcription	Gastric	stomach
2	chr13:76012000-76033000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr13:76012800-76036000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr13:76017800-76033400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr13:76017800-76039400	Weak transcription	Fetal Stomach	stomach
6	chr13:76020400-76054400	Weak transcription	A549	lung
7	chr13:76022000-76032000	Weak transcription	Ovary	ovary
8	chr13:76022000-76032000	Weak transcription	Right Ventricle	heart
9	chr13:76022200-76035800	Weak transcription	Aorta	Aorta
10	chr13:76025000-76032400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr13:76025400-76033000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr13:76026800-76033000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr13:76027000-76034800	Weak transcription	HSMMtube	muscle
14	chr13:76027000-76041600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr13:76027200-76033000	Weak transcription	Adipose Nuclei	Adipose
16	chr13:76027200-76035000	Weak transcription	Osteobl	bone
17	chr13:76027200-76035200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr13:76027200-76038600	Weak transcription	HSMM	muscle
19	chr13:76027800-76032600	Weak transcription	Liver	Liver
20	chr13:76027800-76033000	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr13:76027800-76033000	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr13:76028400-76054800	Weak transcription	Esophagus	oesophagus
23	chr13:76029200-76033000	Weak transcription	Fetal Lung	lung
24	chr13:76029400-76032000	Weak transcription	Left Ventricle	heart
25	chr13:76030200-76033400	Enhancers	Psoas Muscle	Psoas
26	chr13:76030200-76033800	Enhancers	Fetal Heart	heart
27	chr13:76030400-76034600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr13:76030800-76033000	Weak transcription	HMEC	breast
29	chr13:76031000-76032000	Weak transcription	GM12878-XiMat	blood
30	chr13:76031000-76032800	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr13:76031000-76032800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr13:76031000-76033000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr13:76031000-76033000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr13:76031000-76033000	Weak transcription	NHEK	skin
35	chr13:76031000-76033200	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr13:76031000-76034800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr13:76031400-76039000	Weak transcription	HUVEC	blood vessel
38	chr13:76031600-76032000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr13:76031800-76032600	Genic enhancers	HepG2	liver
40	chr13:76031800-76053400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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