Variant report

Variant	rs9573583
Chromosome Location	chr13:76122080-76122081
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr13:76122072-76122215	MCF10A-Er-Src	breast:	n/a	n/a
2	CEBPB	chr13:76122076-76122406	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr13:76109687..76114004-chr13:76118514..76122227,3	K562	blood:
2	chr13:75946802..75947592-chr13:76121701..76122528,2	MCF-7	breast:
3	chr13:76109717..76113590-chr13:76122029..76126081,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261553	TF binding region
UCHL3	TF binding region
ENSG00000188243	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1535725	1.00[AMR][1000 genomes]
rs4632012	1.00[AMR][1000 genomes]
rs4885320	1.00[AMR][1000 genomes]
rs7330411	1.00[AMR][1000 genomes]
rs7987763	1.00[AMR][1000 genomes]
rs7989770	1.00[AMR][1000 genomes]
rs7997260	1.00[AMR][1000 genomes]
rs7998005	1.00[AMR][1000 genomes]
rs8001271	1.00[AMR][1000 genomes]
rs9543982	1.00[AMR][1000 genomes]
rs9543998	1.00[AMR][1000 genomes]
rs973122	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761803	chr13:75943309-76161774	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv900562	chr13:76072743-76176680	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv900563	chr13:76093935-76169347	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv900564	chr13:76100090-76156136	Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv900565	chr13:76111280-76169347	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76112200-76123000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:76112600-76122800	Weak transcription	Fetal Brain Male	brain
3	chr13:76112600-76123000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr13:76112600-76123000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr13:76112600-76123600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:76112800-76122800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr13:76112800-76122800	Weak transcription	Brain Anterior Caudate	brain
8	chr13:76112800-76123000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr13:76112800-76123000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr13:76112800-76123000	Weak transcription	Adipose Nuclei	Adipose
11	chr13:76116000-76123000	Weak transcription	GM12878-XiMat	blood
12	chr13:76116400-76123200	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr13:76119400-76123000	Weak transcription	Fetal Kidney	kidney
14	chr13:76119400-76123000	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr13:76119600-76123000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr13:76119600-76123000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr13:76119600-76123000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr13:76119600-76123000	Weak transcription	Liver	Liver
19	chr13:76119600-76123000	Weak transcription	Hela-S3	cervix
20	chr13:76119600-76123000	Weak transcription	HMEC	breast
21	chr13:76119600-76123000	Weak transcription	NHDF-Ad	bronchial
22	chr13:76119600-76123000	Weak transcription	NHEK	skin
23	chr13:76119600-76123200	Weak transcription	NHLF	lung
24	chr13:76119800-76122200	Weak transcription	K562	blood
25	chr13:76120000-76123000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr13:76120000-76123000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr13:76120000-76123000	Weak transcription	Psoas Muscle	Psoas
28	chr13:76120000-76123200	Weak transcription	Placenta	Placenta
29	chr13:76120600-76123000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr13:76120800-76123000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr13:76121000-76123000	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr13:76121200-76123000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr13:76121600-76123200	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr13:76121800-76122200	Enhancers	Fetal Intestine Small	intestine
35	chr13:76121800-76122800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr13:76121800-76122800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr13:76121800-76122800	Enhancers	HepG2	liver
38	chr13:76121800-76122800	Enhancers	Osteobl	bone
39	chr13:76121800-76123200	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr13:76122000-76123200	Enhancers	Sigmoid Colon	Sigmoid Colon
41	chr13:76122000-76123600	Flanking Active TSS	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links