Variant report

Variant	rs9575643
Chromosome Location	chr13:85259059-85259060
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11843965	0.95[ASN][1000 genomes]
rs12583171	0.82[ASN][1000 genomes]
rs1867899	0.81[ASN][1000 genomes]
rs2329334	0.81[ASN][1000 genomes]
rs3099512	0.81[ASN][1000 genomes]
rs3099514	0.81[ASN][1000 genomes]
rs3099515	0.81[ASN][1000 genomes]
rs3099516	0.81[ASN][1000 genomes]
rs3099517	0.83[ASN][1000 genomes]
rs3099518	0.81[ASN][1000 genomes]
rs3099520	0.81[ASN][1000 genomes]
rs3099521	0.81[ASN][1000 genomes]
rs3099522	0.81[ASN][1000 genomes]
rs3099523	0.80[ASN][1000 genomes]
rs3099524	0.81[ASN][1000 genomes]
rs3099525	0.81[ASN][1000 genomes]
rs3099526	0.81[ASN][1000 genomes]
rs3099527	0.81[ASN][1000 genomes]
rs3099528	0.81[ASN][1000 genomes]
rs3099529	0.81[ASN][1000 genomes]
rs3127541	0.81[ASN][1000 genomes]
rs3127542	0.81[ASN][1000 genomes]
rs3127543	0.81[ASN][1000 genomes]
rs4242993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73532287	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9575645	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949402	chr13:84675752-85606846	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv456046	chr13:84971270-85262508	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv562561	chr13:84971270-85262508	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv900691	chr13:85206473-85294881	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv1851778	chr13:85206473-85299207	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv900692	chr13:85218788-85294881	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv900693	chr13:85226116-85291768	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv900694	chr13:85226116-85344527	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:85257600-85259800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr13:85257800-85260200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:85258200-85259200	Enhancers	HMEC	breast
4	chr13:85258600-85259200	Enhancers	Left Ventricle	heart
5	chr13:85258600-85259400	Enhancers	Pancreas	Pancrea
6	chr13:85258600-85259400	Enhancers	Right Ventricle	heart

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