Variant report

Variant	rs9575815
Chromosome Location	chr13:85761183-85761184
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1038734	0.83[EUR][1000 genomes]
rs1038736	0.83[EUR][1000 genomes]
rs1038737	0.83[EUR][1000 genomes]
rs10507948	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12427878	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17079247	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17079346	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1907006	0.81[EUR][1000 genomes]
rs1907008	0.81[EUR][1000 genomes]
rs1927721	0.81[EUR][1000 genomes]
rs1927722	0.81[EUR][1000 genomes]
rs1927723	0.81[EUR][1000 genomes]
rs3861802	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66997568	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7325749	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7326015	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7326558	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7489848	0.81[EUR][1000 genomes]
rs9319123	0.80[EUR][1000 genomes]
rs9566031	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9566035	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9566046	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9566049	0.83[EUR][1000 genomes]
rs9566052	0.81[EUR][1000 genomes]
rs9566053	0.81[EUR][1000 genomes]
rs9566054	0.81[EUR][1000 genomes]
rs9575766	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9575800	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9575814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9575841	0.83[EUR][1000 genomes]
rs9575843	0.81[EUR][1000 genomes]
rs9575844	0.81[EUR][1000 genomes]
rs9575845	0.81[EUR][1000 genomes]
rs9575846	0.81[EUR][1000 genomes]
rs9575847	0.81[EUR][1000 genomes]
rs9575848	0.81[EUR][1000 genomes]
rs9575850	0.81[EUR][1000 genomes]
rs9594004	0.83[EUR][1000 genomes]
rs9594005	0.83[EUR][1000 genomes]
rs9594006	0.83[EUR][1000 genomes]
rs9602692	0.83[EUR][1000 genomes]
rs9602694	0.83[EUR][1000 genomes]
rs9602695	0.83[EUR][1000 genomes]
rs9602697	0.81[EUR][1000 genomes]
rs9602698	0.81[EUR][1000 genomes]
rs9602700	0.81[EUR][1000 genomes]
rs9602701	0.81[EUR][1000 genomes]
rs9602703	0.81[EUR][1000 genomes]
rs9635063	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9635066	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916866	chr13:85505771-86241562	Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1050105	chr13:85524968-86218429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv541857	chr13:85524968-86218429	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv821673	chr13:85548446-85969019	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv900720	chr13:85598986-85802707	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv900723	chr13:85609277-85802707	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv900725	chr13:85616541-85802707	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv900726	chr13:85623683-85828645	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv900727	chr13:85628777-85802707	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv900729	chr13:85652995-85969076	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	esv2422250	chr13:85718435-85971539	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv562570	chr13:85743199-85824831	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv1799271	chr13:85756410-85803301	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv1801553	chr13:85756410-85803301	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv976138	chr13:85756952-85774725	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:85761000-85761200	Active TSS	Fetal Lung	lung

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