Variant report

Variant	rs9576597
Chromosome Location	chr13:39262435-39262436
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:39243748..39246515-chr13:39262271..39264131,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9566360	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832584	chr13:39074265-39284724	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39260400-39262600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
2	chr13:39260600-39262600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
3	chr13:39260600-39262600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
4	chr13:39260600-39263200	Bivalent/Poised TSS	Fetal Lung	lung
5	chr13:39261400-39262600	Flanking Active TSS	Pancreas	Pancrea
6	chr13:39261400-39263000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
7	chr13:39261600-39262600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr13:39261600-39262600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr13:39261600-39262800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
10	chr13:39261800-39262600	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr13:39261800-39262600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
12	chr13:39261800-39262600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
13	chr13:39261800-39262600	Bivalent/Poised TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr13:39261800-39262600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
15	chr13:39261800-39262600	Enhancers	Liver	Liver
16	chr13:39261800-39262800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
17	chr13:39262000-39262600	Enhancers	Fetal Heart	heart
18	chr13:39262000-39262600	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
19	chr13:39262000-39262600	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
20	chr13:39262000-39263000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
21	chr13:39262200-39262600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr13:39262200-39262600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr13:39262200-39262600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
24	chr13:39262200-39262600	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr13:39262200-39262600	Enhancers	Placenta Amnion	Placenta Amnion
26	chr13:39262200-39262800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
27	chr13:39262200-39262800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
28	chr13:39262200-39263000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr13:39262200-39267400	Weak transcription	Psoas Muscle	Psoas
30	chr13:39262400-39262600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr13:39262400-39262600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
32	chr13:39262400-39262600	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr13:39262400-39262600	Active TSS	Brain Hippocampus Middle	brain
34	chr13:39262400-39262600	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr13:39262400-39262600	Bivalent/Poised TSS	Fetal Brain Female	brain
36	chr13:39262400-39262600	Enhancers	Placenta	Placenta
37	chr13:39262400-39262600	Bivalent Enhancer	Fetal Stomach	stomach
38	chr13:39262400-39262800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr13:39262400-39262800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
40	chr13:39262400-39262800	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
41	chr13:39262400-39262800	Bivalent Enhancer	Stomach Smooth Muscle	stomach
42	chr13:39262400-39263200	Transcr. at gene 5' and 3'	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr13:39262400-39263400	Bivalent Enhancer	Fetal Intestine Large	intestine
44	chr13:39262400-39263600	Active TSS	Fetal Kidney	kidney

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