Variant report

Variant	rs9578132
Chromosome Location	chr13:30280576-30280577
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12870250	0.89[CHB][hapmap]
rs12870927	0.89[CHB][hapmap]
rs1475246	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2078408	0.89[CHB][hapmap]
rs280949	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4769765	0.82[EUR][1000 genomes]
rs4769766	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4769768	0.89[CHB][hapmap]
rs55871108	0.84[EUR][1000 genomes]
rs6490422	0.89[CHB][hapmap]
rs7321919	0.95[ASN][1000 genomes]
rs819112	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9508533	0.89[CHB][hapmap]
rs9508538	0.89[CHB][hapmap]
rs9550488	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9551719	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899961	chr13:30226924-30407273	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30277400-30280600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr13:30278800-30281600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr13:30278800-30283400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr13:30279000-30281200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr13:30279000-30281800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr13:30279200-30281200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr13:30279200-30281600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr13:30279600-30281600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr13:30279600-30281800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr13:30280200-30280800	Enhancers	Spleen	Spleen
11	chr13:30280200-30281400	Weak transcription	NHDF-Ad	bronchial
12	chr13:30280200-30282800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr13:30280400-30284600	Weak transcription	Esophagus	oesophagus

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links