Variant report

Variant	rs957818
Chromosome Location	chr18:39044386-39044387
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs34008625	1.00[AFR][1000 genomes]
rs35223435	1.00[AFR][1000 genomes]
rs72900099	1.00[AFR][1000 genomes]
rs72901943	1.00[AFR][1000 genomes]
rs72905951	1.00[AFR][1000 genomes]
rs8091828	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909564	chr18:38739067-39179256	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1066869	chr18:38742896-39680723	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv543685	chr18:38742896-39680723	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:39041600-39046000	Weak transcription	Gastric	stomach
2	chr18:39042000-39060600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr18:39042400-39046800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr18:39042800-39044800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr18:39042800-39046000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr18:39043000-39045600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr18:39043000-39046800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr18:39043200-39044600	Enhancers	H9 Cell Line	embryonic stem cell
9	chr18:39043200-39044600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr18:39043200-39044800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr18:39043600-39044600	Enhancers	H1 Cell Line	embryonic stem cell
12	chr18:39043600-39045000	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr18:39043800-39044400	Enhancers	Hela-S3	cervix
14	chr18:39044000-39044800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr18:39044200-39044600	Enhancers	Stomach Mucosa	stomach
16	chr18:39044200-39046200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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