Variant report

Variant	rs9579292
Chromosome Location	chr13:29712154-29712155
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10161955	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1029190	0.82[JPT][hapmap]
rs12429003	0.82[JPT][hapmap]
rs1335653	0.82[JPT][hapmap]
rs1360857	0.82[JPT][hapmap]
rs1360858	0.82[JPT][hapmap]
rs1541133	0.82[JPT][hapmap]
rs17575256	0.80[CEU][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1999717	0.82[JPT][hapmap]
rs2050463	0.82[JPT][hapmap]
rs4098154	0.82[JPT][hapmap]
rs4146404	0.82[JPT][hapmap]
rs4146405	0.82[JPT][hapmap]
rs4603401	0.92[CEU][hapmap];0.85[CHB][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4769005	0.82[JPT][hapmap]
rs4769006	0.82[JPT][hapmap]
rs4769688	0.82[JPT][hapmap]
rs4769689	0.82[JPT][hapmap]
rs4769704	0.82[JPT][hapmap]
rs6490365	0.82[JPT][hapmap]
rs6490370	0.82[JPT][hapmap]
rs6490376	0.82[JPT][hapmap]
rs7322266	0.82[JPT][hapmap]
rs7337839	0.82[JPT][hapmap]
rs7981178	0.82[JPT][hapmap]
rs7981243	0.82[JPT][hapmap]
rs7981637	0.82[JPT][hapmap]
rs7982062	0.82[JPT][hapmap]
rs7982077	0.82[JPT][hapmap]
rs7985145	0.82[JPT][hapmap]
rs7998019	0.82[JPT][hapmap]
rs7999446	0.82[JPT][hapmap]
rs7999907	0.82[JPT][hapmap]
rs8001430	0.82[JPT][hapmap]
rs9314942	0.82[JPT][hapmap]
rs9550453	0.82[JPT][hapmap]
rs9578074	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9579299	0.81[CEU][hapmap];0.93[GIH][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9579300	0.85[CHB][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9579308	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	esv3406145	chr13:29616606-29917459	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9579292	MTMR6	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29711200-29712400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:29711800-29714800	Active TSS	Right Ventricle	heart
3	chr13:29712000-29712200	Active TSS	Liver	Liver
4	chr13:29712000-29712400	ZNF genes & repeats	Aorta	Aorta
5	chr13:29712000-29712600	Enhancers	Fetal Heart	heart
6	chr13:29712000-29712600	Enhancers	Dnd41	blood

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