Variant report

Variant	rs9579488
Chromosome Location	chr13:30419601-30419602
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:30419221..30420167-chr13:30498544..30499140,3	MCF-7	breast:
2	chr13:30419279..30420257-chr13:30688857..30689813,4	MCF-7	breast:
3	chr13:30419310..30420181-chr13:30687018..30687782,2	K562	blood:
4	chr13:30417737..30420781-chr13:30496514..30501244,5	MCF-7	breast:
5	chr13:30418151..30421595-chr13:30683662..30686422,3	MCF-7	breast:
6	chr13:30419050..30421060-chr13:30428541..30431182,2	K562	blood:
7	chr13:30419316..30420699-chr13:30498135..30498967,5	MCF-7	breast:
8	chr13:30418877..30421858-chr13:30687750..30689569,3	MCF-7	breast:
9	chr13:30408592..30412430-chr13:30415846..30421304,5	MCF-7	breast:
10	chr13:30419487..30420690-chr13:30686853..30688126,3	MCF-7	breast:
11	chr13:30418186..30420449-chr13:30497353..30498942,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000224405	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs9578146	0.88[CHD][hapmap];0.89[MEX][hapmap]
rs9805864	0.90[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30376600-30420600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr13:30404400-30420000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr13:30407400-30419800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr13:30407400-30419800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr13:30407400-30420800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr13:30408200-30420800	Weak transcription	Right Atrium	heart
7	chr13:30409800-30421600	Weak transcription	Left Ventricle	heart
8	chr13:30410000-30420000	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr13:30411000-30420800	Weak transcription	Ovary	ovary
10	chr13:30412000-30421000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr13:30413200-30420600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr13:30413800-30420400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr13:30414800-30420400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr13:30414800-30420800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr13:30415400-30420800	Weak transcription	Fetal Kidney	kidney
16	chr13:30415800-30420000	Weak transcription	Fetal Brain Male	brain
17	chr13:30415800-30421000	Weak transcription	HMEC	breast
18	chr13:30416200-30419800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr13:30416200-30420000	Weak transcription	Fetal Heart	heart
20	chr13:30416200-30420800	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr13:30416200-30420800	Weak transcription	Primary B cells from peripheral blood	blood
22	chr13:30416200-30420800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr13:30416200-30420800	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr13:30416200-30420800	Weak transcription	Thymus	Thymus
25	chr13:30416200-30421000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr13:30416200-30421000	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr13:30416200-30421000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr13:30416400-30420400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr13:30416600-30420800	Weak transcription	Psoas Muscle	Psoas
30	chr13:30416600-30421600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr13:30416800-30420800	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr13:30417000-30420400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr13:30417000-30420800	Weak transcription	Stomach Mucosa	stomach
34	chr13:30417200-30420400	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr13:30417600-30420600	Weak transcription	Primary hematopoietic stem cells	blood
36	chr13:30417800-30419800	Enhancers	A549	lung
37	chr13:30417800-30420800	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr13:30417800-30425200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr13:30418000-30420000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr13:30418200-30420000	Enhancers	Osteobl	bone
41	chr13:30418200-30420400	Enhancers	NHDF-Ad	bronchial
42	chr13:30418200-30420600	Enhancers	HSMM	muscle
43	chr13:30418400-30419800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr13:30418400-30420400	Weak transcription	NHLF	lung
45	chr13:30418400-30420600	Enhancers	Primary T helper cells fromperipheralblood	blood
46	chr13:30418400-30420800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr13:30418400-30420800	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr13:30418600-30419800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr13:30418600-30419800	Enhancers	Adipose Nuclei	Adipose
50	chr13:30418600-30420600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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