Variant report

Variant	rs9583489
Chromosome Location	chr13:111032833-111032834
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11838776	0.84[ASN][1000 genomes]
rs2391825	0.85[JPT][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55940034	0.82[ASN][1000 genomes]
rs750598	0.84[YRI][hapmap]
rs9515201	0.89[JPT][hapmap];0.82[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1046423	chr13:110936104-111286607	Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:111015600-111036600	Weak transcription	Fetal Intestine Small	intestine
2	chr13:111019600-111034000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr13:111021800-111033400	Enhancers	Fetal Heart	heart
4	chr13:111023000-111033200	Enhancers	Rectal Smooth Muscle	rectum
5	chr13:111024400-111040200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr13:111024800-111039400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr13:111026400-111033000	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr13:111028400-111034600	Enhancers	NHDF-Ad	bronchial
9	chr13:111029000-111033200	Enhancers	NH-A	brain
10	chr13:111029000-111033600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr13:111029000-111033800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr13:111029400-111034200	Genic enhancers	Osteobl	bone
13	chr13:111030000-111033000	Weak transcription	Spleen	Spleen
14	chr13:111030400-111033200	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr13:111030600-111034200	Enhancers	Ovary	ovary
16	chr13:111031000-111033400	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr13:111031000-111033400	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr13:111031000-111033600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr13:111031000-111033600	Enhancers	Right Ventricle	heart
20	chr13:111031000-111033800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr13:111031000-111033800	Enhancers	Right Atrium	heart
22	chr13:111031000-111034000	Genic enhancers	Fetal Muscle Trunk	muscle
23	chr13:111031000-111034400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr13:111031000-111038400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr13:111031000-111039800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr13:111031200-111033600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr13:111031200-111033800	Enhancers	Left Ventricle	heart
28	chr13:111031400-111033600	Genic enhancers	Placenta	Placenta
29	chr13:111031400-111033600	Enhancers	A549	lung
30	chr13:111031400-111034200	Genic enhancers	Fetal Muscle Leg	muscle
31	chr13:111031600-111033000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr13:111031600-111033200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr13:111031600-111033200	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr13:111031600-111033400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr13:111031600-111034400	Genic enhancers	Adipose Nuclei	Adipose
36	chr13:111031600-111035400	Enhancers	NHLF	lung
37	chr13:111031600-111040200	Weak transcription	Aorta	Aorta
38	chr13:111031800-111033200	Enhancers	H1 Cell Line	embryonic stem cell
39	chr13:111031800-111033400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr13:111031800-111035800	Enhancers	HUVEC	blood vessel
41	chr13:111032000-111033000	Enhancers	HSMM	muscle
42	chr13:111032000-111033200	Enhancers	Muscle Satellite Cultured Cells	--
43	chr13:111032000-111034200	Enhancers	Gastric	stomach
44	chr13:111032000-111034200	Enhancers	HSMMtube	muscle
45	chr13:111032000-111034400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr13:111032200-111033200	Enhancers	Fetal Lung	lung
47	chr13:111032200-111033800	Enhancers	Lung	lung
48	chr13:111032200-111034400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
49	chr13:111032400-111033000	Weak transcription	Pancreas	Pancrea
50	chr13:111032400-111033200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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