Variant report

Variant	rs958423
Chromosome Location	chr6:36757266-36757267
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36735042..36738016-chr6:36756015..36758776,2	K562	blood:
2	chr6:36746005..36749095-chr6:36753090..36757403,5	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4711465	0.86[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv5261	chr6:36754545-36798824	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Active TSS	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	nsv818413	chr6:36755402-36759768	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv991181	chr6:36757252-36768835	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36752600-36768400	Weak transcription	Right Atrium	heart
2	chr6:36755600-36757800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:36755800-36757600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:36756000-36757600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:36756000-36757600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:36756000-36758200	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:36756200-36757400	Enhancers	Brain Hippocampus Middle	brain
8	chr6:36756200-36757600	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr6:36756200-36757600	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr6:36756200-36757800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr6:36756200-36757800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:36756200-36757800	Enhancers	Brain Cingulate Gyrus	brain
13	chr6:36756200-36759200	Weak transcription	Brain Germinal Matrix	brain
14	chr6:36756400-36757400	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr6:36756400-36757600	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr6:36756400-36757600	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr6:36756400-36757600	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr6:36756400-36757600	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr6:36756400-36757600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:36756400-36757600	Enhancers	Fetal Stomach	stomach
21	chr6:36756400-36757800	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr6:36756400-36757800	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr6:36756600-36757600	Enhancers	H9 Cell Line	embryonic stem cell
24	chr6:36756600-36757600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:36756600-36757800	Enhancers	H1 Cell Line	embryonic stem cell
26	chr6:36756600-36757800	Enhancers	Fetal Brain Male	brain
27	chr6:36756800-36757600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr6:36756800-36757800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr6:36756800-36757800	Enhancers	Fetal Lung	lung
30	chr6:36756800-36758400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr6:36757000-36757600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr6:36757000-36757600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:36757000-36757600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr6:36757000-36757600	Enhancers	Placenta	Placenta
35	chr6:36757000-36757800	Enhancers	Ovary	ovary
36	chr6:36757200-36757400	Bivalent Enhancer	NHLF	lung
37	chr6:36757200-36759400	Weak transcription	Brain Angular Gyrus	brain
38	chr6:36757200-36759400	Weak transcription	Brain Anterior Caudate	brain
39	chr6:36757200-36761200	Weak transcription	Fetal Kidney	kidney
40	chr6:36757200-36762400	Weak transcription	Brain Substantia Nigra	brain

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