Variant report

Variant	rs9584235
Chromosome Location	chr13:95131563-95131564
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12857519	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17196247	0.97[EUR][1000 genomes]
rs2031528	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2031529	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs41275878	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41275880	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs727299	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7985635	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9590012	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9590014	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9590015	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9590016	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9590017	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95125800-95132200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr13:95129800-95133400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr13:95130000-95133400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr13:95130200-95132200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr13:95130200-95133200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:95130800-95132400	Enhancers	Brain Germinal Matrix	brain
7	chr13:95130800-95133200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr13:95130800-95134400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr13:95131000-95132800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr13:95131200-95132200	Enhancers	Fetal Brain Male	brain
11	chr13:95131200-95132600	Enhancers	Brain Cingulate Gyrus	brain
12	chr13:95131200-95132600	Enhancers	Brain Hippocampus Middle	brain
13	chr13:95131400-95132400	Enhancers	Brain Anterior Caudate	brain
14	chr13:95131400-95133200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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