Variant report

Variant	rs9584461
Chromosome Location	chr13:97645546-97645547
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10467249	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs1604445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16953709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60668201	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7323760	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9582094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9584462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9584464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9584465	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832693	chr13:97594845-97777481	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97630800-97646000	Weak transcription	Esophagus	oesophagus
2	chr13:97636600-97646200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:97636800-97645800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr13:97636800-97646000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr13:97637000-97645800	Weak transcription	Fetal Kidney	kidney
6	chr13:97637000-97645800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr13:97645400-97646000	Enhancers	Spleen	Spleen
8	chr13:97645400-97646200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr13:97645400-97646200	Active TSS	Colonic Mucosa	Colon
10	chr13:97645400-97646200	Weak transcription	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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