Variant report

Variant	rs9584651
Chromosome Location	chr13:98305928-98305929
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs9300428	1.00[EUR][1000 genomes]
rs9300429	1.00[EUR][1000 genomes]
rs9582166	0.90[AMR][1000 genomes]
rs9584631	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98303200-98306200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:98303600-98315800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr13:98304600-98310400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr13:98305400-98306800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr13:98305400-98307000	Enhancers	Fetal Lung	lung
6	chr13:98305800-98306000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr13:98305800-98306000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr13:98305800-98306200	Enhancers	HMEC	breast
9	chr13:98305800-98306400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr13:98305800-98306400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr13:98305800-98306400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr13:98305800-98310600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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