Variant report

Variant	rs958477
Chromosome Location	chr12:29355772-29355773
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1021574	0.97[AFR][1000 genomes]
rs10771495	0.97[AFR][1000 genomes]
rs1496215	0.90[AFR][1000 genomes]
rs2349972	0.84[AFR][1000 genomes]
rs4931159	0.97[AFR][1000 genomes]
rs6487780	0.90[AFR][1000 genomes]
rs74076760	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532233	chr12:29009388-29496179	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv995123	chr12:29095272-29571558	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1053641	chr12:29268813-29854413	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:29325400-29364600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr12:29346000-29360800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr12:29353800-29355800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr12:29354000-29360400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr12:29354200-29357600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr12:29355400-29355800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
7	chr12:29355400-29355800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr12:29355600-29355800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
9	chr12:29355600-29355800	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr12:29355600-29355800	Strong transcription	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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