Variant report

Variant	rs9587969
Chromosome Location	chr13:110364789-110364790
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs56857951	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9587968	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044855	chr13:110301572-110408608	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110359000-110367800	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr13:110359800-110368400	Weak transcription	Hela-S3	cervix
3	chr13:110360000-110367800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:110360600-110368000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr13:110361000-110368200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr13:110361000-110368200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr13:110363600-110367600	Weak transcription	Liver	Liver
8	chr13:110364200-110364800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr13:110364200-110365000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr13:110364400-110364800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr13:110364400-110364800	Enhancers	Fetal Intestine Large	intestine
12	chr13:110364400-110364800	Genic enhancers	Dnd41	blood
13	chr13:110364400-110365000	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr13:110364400-110365000	Enhancers	Fetal Intestine Small	intestine
15	chr13:110364400-110365000	Enhancers	Fetal Kidney	kidney
16	chr13:110364600-110364800	Enhancers	Stomach Mucosa	stomach
17	chr13:110364600-110365000	Enhancers	Fetal Lung	lung
18	chr13:110364600-110365000	Enhancers	K562	blood
19	chr13:110364600-110365200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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