Variant report

Variant	rs9588096
Chromosome Location	chr13:110762660-110762661
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:110761020..110763183-chr13:110765963..110768234,2	MCF-7	breast:
2	chr13:110436205..110441713-chr13:110758837..110762777,7	MCF-7	breast:
3	chr13:110436096..110439350-chr13:110760184..110763012,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185950	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16975320	0.87[ASN][1000 genomes]
rs16975342	0.89[ASN][1000 genomes]
rs57770325	1.00[ASN][1000 genomes]
rs58737693	1.00[ASN][1000 genomes]
rs58782431	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7319411	0.82[ASN][1000 genomes]
rs73622485	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901005	chr13:110733102-110766350	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv563097	chr13:110742197-110766350	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv901006	chr13:110748857-110806490	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv563099	chr13:110749252-110778894	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv456115	chr13:110756664-110806490	Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv563100	chr13:110756664-110806490	Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	esv3392579	chr13:110758851-110763149	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110760800-110762800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr13:110760800-110762800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:110760800-110762800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr13:110760800-110762800	Enhancers	A549	lung
5	chr13:110760800-110763000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr13:110760800-110763000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr13:110760800-110763000	Enhancers	Fetal Heart	heart
8	chr13:110760800-110766400	Weak transcription	Spleen	Spleen
9	chr13:110761000-110763000	Enhancers	HMEC	breast
10	chr13:110761200-110762800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr13:110761200-110762800	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr13:110761200-110763000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr13:110761200-110763000	Enhancers	Left Ventricle	heart
14	chr13:110761400-110762800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr13:110761400-110762800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr13:110761400-110762800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
17	chr13:110761400-110762800	Enhancers	Colon Smooth Muscle	Colon
18	chr13:110761400-110763000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr13:110761400-110763000	Enhancers	Fetal Muscle Leg	muscle
20	chr13:110761400-110763000	Enhancers	NHLF	lung
21	chr13:110761600-110762800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr13:110761600-110762800	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr13:110761600-110762800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr13:110761600-110762800	Enhancers	Brain Substantia Nigra	brain
25	chr13:110761600-110762800	Enhancers	Fetal Lung	lung
26	chr13:110761600-110762800	Flanking Active TSS	Stomach Smooth Muscle	stomach
27	chr13:110761600-110763000	Enhancers	NH-A	brain
28	chr13:110761600-110765400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr13:110761600-110767800	Weak transcription	Lung	lung
30	chr13:110761800-110762800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr13:110761800-110762800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr13:110761800-110762800	Enhancers	Brain Inferior Temporal Lobe	brain
33	chr13:110761800-110762800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
34	chr13:110761800-110762800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
35	chr13:110761800-110765400	Weak transcription	Right Ventricle	heart
36	chr13:110762000-110762800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr13:110762000-110762800	Enhancers	Brain Hippocampus Middle	brain
38	chr13:110762000-110762800	Weak transcription	Psoas Muscle	Psoas
39	chr13:110762000-110762800	Flanking Active TSS	HSMMtube	muscle
40	chr13:110762000-110762800	Flanking Active TSS	Osteobl	bone
41	chr13:110762000-110763000	Enhancers	Dnd41	blood
42	chr13:110762000-110765800	Weak transcription	Hela-S3	cervix
43	chr13:110762000-110766000	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr13:110762400-110763000	Enhancers	NHDF-Ad	bronchial
45	chr13:110762400-110764800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr13:110762400-110765000	Weak transcription	NHEK	skin
47	chr13:110762400-110765200	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr13:110762400-110765400	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr13:110762600-110762800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr13:110762600-110762800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links