Variant report

Variant	rs9589378
Chromosome Location	chr13:92608088-92608089
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1411518	0.81[ASW][hapmap]
rs2352538	1.00[GIH][hapmap]
rs4415894	1.00[GIH][hapmap];0.83[TSI][hapmap]
rs7322707	1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs7329574	1.00[GIH][hapmap]
rs7338255	0.85[EUR][1000 genomes]
rs7994558	1.00[GIH][hapmap]
rs9523481	0.81[EUR][1000 genomes]
rs9589375	0.87[CEU][hapmap];0.83[TSI][hapmap]
rs9589379	0.94[EUR][1000 genomes]
rs9589381	1.00[GIH][hapmap];0.82[TSI][hapmap]
rs9589390	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.94[TSI][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378326	chr13:92445514-92816367	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv900885	chr13:92561714-92621620	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv900886	chr13:92576149-92626399	Enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv2756005	chr13:92584199-93080799	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv562722	chr13:92607374-92733984	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92607400-92608200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:92607600-92608200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:92607600-92608400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr13:92607800-92608200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:92607800-92608200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr13:92608000-92608400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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