Variant report

Variant	rs9589549
Chromosome Location	chr13:93120597-93120598
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs9584029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9589546	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9589552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9589553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9589554	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832680	chr13:93021114-93181489	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93119800-93120800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr13:93120200-93120800	Weak transcription	Ovary	ovary

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links