Variant report

Variant	rs9589555
Chromosome Location	chr13:93125985-93125986
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs61973628	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61973629	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61973630	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61973631	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61973632	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61973633	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61973636	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61973637	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832680	chr13:93021114-93181489	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv977269	chr13:93125018-93132725	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93125600-93126400	Enhancers	Duodenum Mucosa	Duodenum
2	chr13:93125800-93126600	Weak transcription	Fetal Intestine Large	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links