Variant report

Variant	rs9589702
Chromosome Location	chr13:93934664-93934665
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:93933342..93934881-chr13:108607842..108609818,2	K562	blood:
2	chr13:93924002..93926974-chr13:93932644..93934899,3	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12430104	0.89[EUR][1000 genomes]
rs12853940	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[EUR][1000 genomes]
rs12873150	1.00[CEU][hapmap];0.83[CHB][hapmap];0.87[EUR][1000 genomes]
rs17234334	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[EUR][1000 genomes]
rs17234362	0.82[EUR][1000 genomes]
rs17300059	1.00[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17300101	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[EUR][1000 genomes]
rs2031845	0.84[EUR][1000 genomes]
rs2057524	1.00[CEU][hapmap];0.82[CHB][hapmap];0.88[EUR][1000 genomes]
rs35482480	0.86[EUR][1000 genomes]
rs4773727	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4773728	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4773731	0.91[EUR][1000 genomes]
rs67667167	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs68078947	0.87[EUR][1000 genomes]
rs7139955	1.00[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7996491	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8001061	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[EUR][1000 genomes]
rs9584099	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9584100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584101	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9584102	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9589696	1.00[CEU][hapmap];0.94[JPT][hapmap];0.81[AFR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9589699	1.00[AFR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9589701	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9589705	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9589707	0.88[EUR][1000 genomes]
rs9589709	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[EUR][1000 genomes]
rs9589710	1.00[CEU][hapmap];0.83[CHB][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2751156	chr13:93912999-93988638	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93923800-93935600	Weak transcription	Ovary	ovary
2	chr13:93924400-93942000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr13:93929000-93953800	Weak transcription	Right Atrium	heart
4	chr13:93932400-93952200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:93932600-93938600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr13:93933000-93938200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr13:93933200-93938400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr13:93933400-93938000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr13:93933400-93938200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr13:93934200-93934800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr13:93934200-93934800	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr13:93934400-93934800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr13:93934600-93934800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links