Variant report

Variant	rs9590206
Chromosome Location	chr13:95880112-95880113
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95870343..95873007-chr13:95877670..95880135,2	MCF-7	breast:
2	chr13:95875072..95877586-chr13:95879150..95881186,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9590203	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533659	chr13:95757713-96042149	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv832689	chr13:95759073-95921308	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95842200-95898200	Weak transcription	NHDF-Ad	bronchial
2	chr13:95847800-95880400	Weak transcription	Ovary	ovary
3	chr13:95856400-95898200	Weak transcription	NHEK	skin
4	chr13:95858600-95880400	Weak transcription	Fetal Thymus	thymus
5	chr13:95859000-95885800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr13:95859000-95887800	Weak transcription	HSMM	muscle
7	chr13:95859000-95901000	Weak transcription	Aorta	Aorta
8	chr13:95859200-95901400	Weak transcription	Primary T cells from cord blood	blood
9	chr13:95859200-95902200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr13:95861600-95906200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr13:95861800-95899000	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr13:95862000-95898200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr13:95862200-95898200	Weak transcription	HSMMtube	muscle
14	chr13:95863000-95898400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr13:95863200-95883400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr13:95863200-95895400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr13:95866200-95887600	Weak transcription	HUVEC	blood vessel
18	chr13:95866200-95897400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr13:95866200-95897600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr13:95872000-95897600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr13:95872200-95897400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr13:95874800-95888200	Weak transcription	NHLF	lung
23	chr13:95874800-95897800	Weak transcription	Pancreas	Pancrea
24	chr13:95874800-95898200	Weak transcription	Colonic Mucosa	Colon
25	chr13:95875000-95880400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr13:95875000-95897600	Weak transcription	Fetal Intestine Large	intestine
27	chr13:95875200-95883600	Weak transcription	A549	lung
28	chr13:95876800-95882800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr13:95878600-95880800	Enhancers	Primary B cells from peripheral blood	blood
30	chr13:95878600-95880800	Flanking Active TSS	GM12878-XiMat	blood
31	chr13:95878600-95882600	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr13:95878800-95880200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr13:95879000-95880600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
34	chr13:95879200-95880400	Weak transcription	Left Ventricle	heart
35	chr13:95879200-95883600	Weak transcription	Lung	lung
36	chr13:95879200-95883600	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr13:95879200-95887600	Weak transcription	Gastric	stomach
38	chr13:95879200-95907400	Weak transcription	Small Intestine	intestine
39	chr13:95879200-95914000	Weak transcription	Rectal Smooth Muscle	rectum
40	chr13:95879400-95880200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
41	chr13:95879400-95897400	Weak transcription	Fetal Intestine Small	intestine
42	chr13:95879600-95880400	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr13:95879600-95893800	Weak transcription	Duodenum Mucosa	Duodenum
44	chr13:95879600-95898200	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr13:95879800-95880800	Enhancers	Primary hematopoietic stem cells	blood
46	chr13:95880000-95880600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr13:95880000-95881200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
48	chr13:95880000-95881600	Enhancers	K562	blood
49	chr13:95880000-95887200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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