Variant report

Variant	rs9590213
Chromosome Location	chr13:95901825-95901826
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95898278..95901890-chr13:95902438..95906069,3	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1764420	1.00[AMR][1000 genomes]
rs57192316	1.00[AMR][1000 genomes]
rs57994742	1.00[AMR][1000 genomes]
rs74105447	1.00[AMR][1000 genomes]
rs9524905	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533659	chr13:95757713-96042149	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv832689	chr13:95759073-95921308	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95859200-95902200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr13:95861600-95906200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr13:95879200-95907400	Weak transcription	Small Intestine	intestine
4	chr13:95879200-95914000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr13:95880600-95922600	Weak transcription	Psoas Muscle	Psoas
6	chr13:95880800-95902400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:95881600-95904000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr13:95884800-95906400	Weak transcription	Hela-S3	cervix
9	chr13:95887000-95918800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr13:95888000-95909000	Weak transcription	Fetal Stomach	stomach
11	chr13:95888400-95906800	Weak transcription	Gastric	stomach
12	chr13:95890000-95907600	Weak transcription	Colon Smooth Muscle	Colon
13	chr13:95890800-95906400	Weak transcription	Osteobl	bone
14	chr13:95891800-95908000	Weak transcription	Esophagus	oesophagus
15	chr13:95892600-95905400	Weak transcription	Primary B cells from peripheral blood	blood
16	chr13:95893000-95905400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr13:95896000-95902000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr13:95896200-95923400	Weak transcription	Ovary	ovary
19	chr13:95897000-95927400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr13:95898800-95906200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr13:95898800-95906600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr13:95898800-95908000	Weak transcription	Stomach Smooth Muscle	stomach
23	chr13:95898800-95919600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr13:95899000-95903200	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr13:95899000-95906000	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr13:95899000-95910000	Weak transcription	Fetal Intestine Large	intestine
27	chr13:95899000-95919600	Weak transcription	Fetal Lung	lung
28	chr13:95899400-95907000	Weak transcription	Duodenum Mucosa	Duodenum
29	chr13:95899600-95902400	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr13:95899600-95903200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr13:95899600-95903600	Weak transcription	HSMMtube	muscle
32	chr13:95899800-95906000	Weak transcription	NHEK	skin
33	chr13:95899800-95919600	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr13:95900000-95906200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr13:95900000-95906200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr13:95900000-95906200	Weak transcription	NHDF-Ad	bronchial
37	chr13:95900000-95906200	Weak transcription	NHLF	lung
38	chr13:95900000-95907400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr13:95900000-95907600	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr13:95900000-95908000	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr13:95900000-95910200	Weak transcription	Fetal Intestine Small	intestine
42	chr13:95900000-95918600	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr13:95900000-95918800	Weak transcription	Lung	lung
44	chr13:95900000-95919000	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr13:95900000-95920000	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr13:95900200-95902000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr13:95900400-95902600	Weak transcription	GM12878-XiMat	blood
48	chr13:95900600-95903400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr13:95900600-95906000	Weak transcription	HUVEC	blood vessel
50	chr13:95900600-95907000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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