Variant report

Variant	rs9590265
Chromosome Location	chr13:96055794-96055795
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs7997730	1.00[EUR][1000 genomes]
rs7998321	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9302071	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9561881	1.00[CHB][hapmap]
rs9584296	1.00[EUR][1000 genomes]
rs9590261	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9590268	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043019	chr13:95924585-96152616	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1037673	chr13:95930191-96146554	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541882	chr13:95930191-96146554	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96055000-96056000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr13:96055200-96055800	Enhancers	H1 Cell Line	embryonic stem cell
3	chr13:96055400-96056000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr13:96055600-96055800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr13:96055600-96055800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr13:96055600-96055800	Enhancers	GM12878-XiMat	blood
7	chr13:96055600-96056000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
8	chr13:96055600-96056000	Enhancers	Brain Substantia Nigra	brain
9	chr13:96055600-96056800	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr13:96055600-96056800	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr13:96055600-96056800	Active TSS	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links