Variant report

Variant	rs9590332
Chromosome Location	chr13:96463832-96463833
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs9590324	0.80[AFR][1000 genomes]
rs9590349	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832690	chr13:96330757-96508077	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv3509289	chr13:96461000-96505090	ZNF genes & repeats Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3509290	chr13:96461000-96505090	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96443800-96465600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:96443800-96466000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr13:96444400-96477600	Weak transcription	Brain Angular Gyrus	brain
4	chr13:96444400-96477600	Weak transcription	NHLF	lung
5	chr13:96444400-96485600	Weak transcription	NHDF-Ad	bronchial
6	chr13:96445600-96477400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr13:96445800-96490000	Weak transcription	HepG2	liver
8	chr13:96446200-96477400	Weak transcription	Gastric	stomach
9	chr13:96446400-96464800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr13:96446400-96466000	Weak transcription	NHEK	skin
11	chr13:96446800-96477400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr13:96446800-96477400	Weak transcription	HSMMtube	muscle
13	chr13:96447200-96477400	Weak transcription	Osteobl	bone
14	chr13:96449000-96464800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr13:96452000-96490600	Weak transcription	Fetal Kidney	kidney
16	chr13:96452800-96466000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr13:96455000-96467800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr13:96458800-96477400	Weak transcription	NH-A	brain
19	chr13:96460400-96477200	Weak transcription	A549	lung
20	chr13:96460400-96477400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr13:96461000-96465000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr13:96461800-96466000	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr13:96462000-96464800	Weak transcription	Aorta	Aorta
24	chr13:96462000-96464800	Weak transcription	Lung	lung
25	chr13:96462000-96465000	Weak transcription	Ovary	ovary
26	chr13:96462000-96465400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr13:96462000-96465800	Weak transcription	Spleen	Spleen
28	chr13:96462000-96466000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr13:96462000-96466000	Weak transcription	Esophagus	oesophagus
30	chr13:96462000-96466000	Weak transcription	Fetal Stomach	stomach
31	chr13:96462000-96468000	Weak transcription	Pancreas	Pancrea
32	chr13:96462000-96477400	Weak transcription	HSMM	muscle
33	chr13:96462200-96465600	Weak transcription	Adipose Nuclei	Adipose
34	chr13:96462200-96477200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr13:96462200-96477400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr13:96462600-96464800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr13:96462600-96465000	Weak transcription	Fetal Brain Female	brain
38	chr13:96462600-96465000	Weak transcription	Left Ventricle	heart
39	chr13:96462600-96465200	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr13:96462600-96465400	Weak transcription	Brain Cingulate Gyrus	brain
41	chr13:96462600-96465400	Weak transcription	Fetal Muscle Leg	muscle
42	chr13:96462600-96465600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr13:96462600-96465800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr13:96462600-96465800	Weak transcription	Rectal Smooth Muscle	rectum
45	chr13:96462600-96466000	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr13:96462600-96466000	Weak transcription	Fetal Intestine Large	intestine
47	chr13:96462600-96467800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr13:96462600-96485600	Weak transcription	Hela-S3	cervix
49	chr13:96462800-96464800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr13:96462800-96465000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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