Variant report

Variant	rs9593079
Chromosome Location	chr13:76028072-76028073
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1022912	0.81[ASN][1000 genomes]
rs7988372	0.94[ASN][1000 genomes]
rs9543933	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9543935	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9543937	0.96[CEU][hapmap];0.82[CHD][hapmap];0.93[GIH][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9593078	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761803	chr13:75943309-76161774	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv455987	chr13:75972846-76090084	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv562346	chr13:75972846-76090084	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76007400-76032000	Weak transcription	Gastric	stomach
2	chr13:76012000-76033000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr13:76012800-76036000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr13:76017800-76033400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr13:76017800-76039400	Weak transcription	Fetal Stomach	stomach
6	chr13:76020400-76030200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr13:76020400-76054400	Weak transcription	A549	lung
8	chr13:76021800-76030200	Weak transcription	Fetal Heart	heart
9	chr13:76022000-76028200	Weak transcription	Psoas Muscle	Psoas
10	chr13:76022000-76032000	Weak transcription	Ovary	ovary
11	chr13:76022000-76032000	Weak transcription	Right Ventricle	heart
12	chr13:76022200-76035800	Weak transcription	Aorta	Aorta
13	chr13:76025000-76032400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr13:76025400-76030600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr13:76025400-76033000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr13:76026200-76028400	Enhancers	NHEK	skin
17	chr13:76026400-76030800	Enhancers	HMEC	breast
18	chr13:76026400-76031000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr13:76026800-76033000	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr13:76027000-76030200	Weak transcription	HepG2	liver
21	chr13:76027000-76034800	Weak transcription	HSMMtube	muscle
22	chr13:76027000-76041600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr13:76027200-76028800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr13:76027200-76033000	Weak transcription	Adipose Nuclei	Adipose
25	chr13:76027200-76035000	Weak transcription	Osteobl	bone
26	chr13:76027200-76035200	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr13:76027200-76038600	Weak transcription	HSMM	muscle
28	chr13:76027800-76029400	Enhancers	Left Ventricle	heart
29	chr13:76027800-76031000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr13:76027800-76032600	Weak transcription	Liver	Liver
31	chr13:76027800-76033000	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr13:76027800-76033000	Enhancers	Skeletal Muscle Female	skeletal muscle

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