Variant report

Variant	rs9593953
Chromosome Location	chr13:85501825-85501826
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10871212	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11840617	0.85[ASN][1000 genomes]
rs17078971	0.88[ASN][1000 genomes]
rs4911043	0.97[ASN][1000 genomes]
rs57975952	0.85[ASN][1000 genomes]
rs58976422	0.97[ASN][1000 genomes]
rs59092726	0.91[ASN][1000 genomes]
rs61383774	0.85[ASN][1000 genomes]
rs72632130	0.97[ASN][1000 genomes]
rs72632137	0.97[ASN][1000 genomes]
rs72632150	1.00[ASN][1000 genomes]
rs72632153	1.00[ASN][1000 genomes]
rs72632164	1.00[ASN][1000 genomes]
rs9531674	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9593952	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9593962	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9593963	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9602591	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9602612	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9602613	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9602614	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9602615	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949402	chr13:84675752-85606846	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv900702	chr13:85276978-85605946	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv900703	chr13:85337948-85582307	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv832667	chr13:85422787-85557377	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1041062	chr13:85457391-85531111	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv900704	chr13:85478855-85651739	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv562562	chr13:85482828-85538474	Flanking Active TSS Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv471161	chr13:85497445-85628777	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv430595	chr13:85499399-85566699	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:85499800-85526600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:85501400-85502000	Enhancers	Esophagus	oesophagus
3	chr13:85501600-85503400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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