Variant report

Variant	rs9594191
Chromosome Location	chr13:37681847-37681848
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12184515	0.80[EUR][1000 genomes]
rs17773251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37677800-37682200	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr13:37679800-37682800	Weak transcription	Fetal Stomach	stomach
3	chr13:37680200-37682000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr13:37680400-37682000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr13:37680400-37682000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr13:37680400-37682600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr13:37680600-37682000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr13:37681200-37682800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr13:37681600-37682000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr13:37681600-37682000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr13:37681600-37682800	Weak transcription	Colon Smooth Muscle	Colon
12	chr13:37681600-37685000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links