Variant report

Variant	rs9594255
Chromosome Location	chr13:38619739-38619740
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:38444174..38445062-chr13:38619564..38620172,4	MCF-7	breast:
2	chr13:38619645..38620169-chr13:39104518..39105098,2	MCF-7	breast:
3	chr13:38619641..38620162-chr5:178301644..178302146,3	MCF-7	breast:
4	chr13:38619618..38620640-chr5:178301624..178302148,7	MCF-7	breast:
5	chr13:38444501..38445012-chr13:38619704..38620553,2	K562	blood:
6	chr13:38213105..38213606-chr13:38619616..38620287,2	MCF-7	breast:
7	chr13:38343140..38343850-chr13:38619631..38620180,3	K562	blood:
8	chr13:38214466..38215276-chr13:38619175..38620143,2	MCF-7	breast:
9	chr13:38343183..38343822-chr13:38619567..38620143,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-UFM1-12	chr13:38618088-38620549	NONHSAT033258

No data

No data

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11842189	1.00[AFR][1000 genomes]
rs11842491	1.00[AFR][1000 genomes]
rs13378267	1.00[AFR][1000 genomes]
rs7489844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9315535	0.97[AFR][1000 genomes]
rs9315536	0.97[AFR][1000 genomes]
rs9603313	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv949406	chr13:38561474-39033484	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv899999	chr13:38582178-38636966	ZNF genes & repeats Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv900000	chr13:38608928-38710260	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38606400-38621400	Weak transcription	Right Ventricle	heart
2	chr13:38616000-38621200	Weak transcription	Liver	Liver
3	chr13:38618400-38620200	ZNF genes & repeats	Aorta	Aorta
4	chr13:38618600-38619800	ZNF genes & repeats	Lung	lung
5	chr13:38619200-38620200	ZNF genes & repeats	Pancreas	Pancrea
6	chr13:38619400-38619800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr13:38619600-38620000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
8	chr13:38619600-38620000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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