Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11842246	0.84[EUR][1000 genomes]
rs17069575	0.81[EUR][1000 genomes]
rs17069577	0.81[EUR][1000 genomes]
rs58611201	0.81[EUR][1000 genomes]
rs61003241	0.81[EUR][1000 genomes]
rs7330154	0.83[AMR][1000 genomes]
rs7331421	0.93[AFR][1000 genomes]
rs73485231	0.81[EUR][1000 genomes]
rs73485299	0.81[EUR][1000 genomes]
rs73485302	0.81[EUR][1000 genomes]
rs7492065	1.00[EUR][1000 genomes]
rs9316262	0.93[AFR][1000 genomes]
rs9316265	1.00[EUR][1000 genomes]
rs9562713	0.93[AFR][1000 genomes]
rs9562714	0.93[AFR][1000 genomes]
rs9562715	0.93[AFR][1000 genomes]
rs9567802	0.93[AFR][1000 genomes]
rs9567804	0.93[AFR][1000 genomes]
rs9567805	0.93[AFR][1000 genomes]
rs9595618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763019	chr13:47348229-48123447	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv3394678	chr13:47678184-48039379	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832599	chr13:47703075-47873855	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1028	chr13:47745293-47760918	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:47749200-47752000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr13:47749200-47752200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr13:47749400-47751800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr13:47750200-47751600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr13:47750200-47757800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr13:47750600-47753200	Weak transcription	NHDF-Ad	bronchial

Quick Search: